Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| ESCA | rs11767726 | chr7:150018096 | A/C | 8.56E-6 | 142 | 3.47 | 6.87 | 7.72 | KM Plot |
| ESCA | rs12116484 | chr1:247207285 | A/G | 3.41E-5 | 142 | 6.77 | 11.52 | 3.87 | KM Plot |
| ESCA | rs12120876 | chr1:247205960 | A/T | 3.53E-5 | 142 | 6.5 | 8.9 | 3.87 | KM Plot |
| ESCA | rs12123948 | chr1:247207155 | C/T | 3.53E-5 | 142 | 6.5 | 8.9 | 3.87 | KM Plot |
| ESCA | rs12139893 | chr1:247208406 | G/A | 3.53E-5 | 142 | 6.5 | 8.9 | 3.87 | KM Plot |
| ESCA | rs12353960 | chr1:247256601 | C/T | 3.17E-5 | 142 | 6.5 | 14.13 | 3.87 | KM Plot |
| ESCA | rs12563431 | chr1:247153573 | A/T | 1.18E-5 | 136 | 3.87 | 8.58 | 7.17 | KM Plot |
| ESCA | rs12617962 | chr2:86513102 | A/G | 2.81E-6 | 142 | 0.1 | 0.27 | 8.6 | KM Plot |
| ESCA | rs12701823 | chr7:1102241 | A/G | 0.000102 | 141 | 5.13 | 8.83 | 3.72 | KM Plot |
| ESCA | rs12972187 | chr19:37249481 | G/A | 5.75E-5 | 139 | 6.77 | 8.35 | 2.7 | KM Plot |
| ESCA | rs140978293 | chr1:247181343 | T/TA | 1.02E-5 | 139 | 6.77 | 8.9 | 3.87 | KM Plot |
| ESCA | rs144527493 | chr21:46252152 | T/C | 2.51E-5 | 141 | 7.03 | 7.53 | 2.63 | KM Plot |
| ESCA | rs144668649 | chr21:46246584 | C/T | 3.25E-5 | 139 | 6.5 | 7.53 | 2.63 | KM Plot |
| ESCA | rs146921348 | chr1:247196832 | G/A | 5.07E-5 | 139 | 6.47 | 14.13 | 3.87 | KM Plot |
| ESCA | rs148917935 | chr1:247184844 | ATTTTGTTTTG/A | 1.02E-5 | 139 | 6.77 | 8.9 | 3.87 | KM Plot |